PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08287.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 59aa    MW: 6854.08 Da    PI: 10.8612
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08287.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.75.8e-2025280129
                      NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                              sgyWkatgkd+ v++  +g+l+g++ktLvfyk+rap+g kt W+mhe+rle
  Sme2.5_08287.1_g00001.1   2 SGYWKATGKDRIVFDLqTGALIGMRKTLVFYKNRAPHGIKTGWIMHEFRLE 52 
                              7************98758889****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.034159IPR003441NAC domain
PfamPF023652.3E-10251IPR003441NAC domain
SuperFamilySSF1019419.42E-22256IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 59 aa     Download sequence    Send to blast
MSGYWKATGK DRIVFDLQTG ALIGMRKTLV FYKNRAPHGI KTGWIMHEFR LENPHIPPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-1425495145NO APICAL MERISTEM PROTEIN
1ut4_B5e-1425495145NO APICAL MERISTEM PROTEIN
1ut7_A5e-1425495145NO APICAL MERISTEM PROTEIN
1ut7_B5e-1425495145NO APICAL MERISTEM PROTEIN
3swm_A5e-1425598149NAC domain-containing protein 19
3swm_B5e-1425598149NAC domain-containing protein 19
3swm_C5e-1425598149NAC domain-containing protein 19
3swm_D5e-1425598149NAC domain-containing protein 19
3swp_A5e-1425598149NAC domain-containing protein 19
3swp_B5e-1425598149NAC domain-containing protein 19
3swp_C5e-1425598149NAC domain-containing protein 19
3swp_D5e-1425598149NAC domain-containing protein 19
4dul_A5e-1425495145NAC domain-containing protein 19
4dul_B5e-1425495145NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754457e-71HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755187e-71HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240497.11e-36PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
RefseqXP_015160122.11e-36PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ84TE67e-23NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLM1CE891e-36M1CE89_SOLTU; Uncharacterized protein
TrEMBLK4C3L61e-36K4C3L6_SOLLC; Uncharacterized protein
STRINGSolyc06g008360.2.14e-36(Solanum lycopersicum)
STRINGPGSC0003DMT4000655594e-36(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18822466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-30NAC domain containing protein 74